PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06566.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 183aa MW: 21181.9 Da PI: 6.1549

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06566.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55	1.1e-17	17	63	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +e+k r+vtfskR+ ++ KA+E S+L++a+v v++fs++gk y y Sme2.5_06566.1_g00003.1 17 VESKDARYVTFSKRKLSLFRKANEFSILTGADVGVLLFSPSGKTYSY 63 799*****************************************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-23	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.175	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-23	8	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-15	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.0E-20	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-15	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-15	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MERRPSKGRQ KIEMKLVESK DARYVTFSKR KLSLFRKANE FSILTGADVG VLLFSPSGKT 60 YSYGSANIEN IIDNFLEWKL ENLQVEDQSD GGKSNVFQAF DDLREEYEIM NDKEENRKIK 120 YSISHPDSEI MPDKHRLEQL LALKSRLEKL KKEAKDNILA ERSQFDLNVI PNQDEGEGSV 180 THH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015159413.1	1e-78	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	M1AZT9	1e-80	M1AZT9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400033861	2e-81	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	3e-20	AGAMOUS-like 29