PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06569.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24514.5 Da    PI: 5.0511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06569.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651.1e-202477356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              R++f+++q++ Le++Fe ++ p  +++++LAk+lgL+ rqV +WFqN+Ra+ k
  Sme2.5_06569.1_g00004.1 24 MRRRFNDDQIKSLEDMFETESRPELRTKQQLAKRLGLQPRQVAIWFQNKRARSK 77
                             699*************************************************99 PP
2HD-ZIP_I/II101.76.5e-3325115393
              HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                              +rr++++q+k+LE++Fe+e++ e + K++la++Lglqprqva+WFqn+RAR k+kqlE +y++L+ +yd+l ++ e L+ke+++L 
  Sme2.5_06569.1_g00004.1  25 RRRFNDDQIKSLEDMFETESRPELRTKQQLAKRLGLQPRQVAIWFQNKRARSKSKQLELEYRMLQMSYDNLGSKYELLKKEHASLL 110
                              79***********************************************************************************9 PP

              HD-ZIP_I/II  89 eelke 93 
                               +l++
  Sme2.5_06569.1_g00004.1 111 IQLQR 115
                              88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.8E-18781IPR009057Homeodomain-like
PROSITE profilePS5007117.541979IPR001356Homeobox domain
SMARTSM003892.0E-162183IPR001356Homeobox domain
PfamPF000465.6E-182477IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182485IPR009057Homeodomain-like
CDDcd000863.93E-152580No hitNo description
PRINTSPR000318.0E-65059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000318.0E-65975IPR000047Helix-turn-helix motif
PfamPF021831.3E-1079119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MPPTNSDVWS QSMSSSIKKC NDNMRRRFND DQIKSLEDMF ETESRPELRT KQQLAKRLGL  60
QPRQVAIWFQ NKRARSKSKQ LELEYRMLQM SYDNLGSKYE LLKKEHASLL IQLQRLRKLT  120
EKSGNEEIQK NGIKSETDVK QDDFSPENCS PEFGLPLCED SRGIDYMGQE SDILDMAQIA  180
DGLSEIENKY NFESRTFFDN SGCTSPLWEF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092611e-115AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankHG9755201e-115HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552550.11e-123PREDICTED: homeobox-leucine zipper protein ATHB-7-like
SwissprotP468972e-37ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A2G2XJW31e-122A0A2G2XJW3_CAPBA; Homeobox-leucine zipper protein HOX6
TrEMBLA0A2G3DAJ51e-122A0A2G3DAJ5_CAPCH; Homeobox-leucine zipper protein HOX6
STRINGXP_009796883.11e-117(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102732125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.18e-40homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]