PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06578.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 383aa MW: 42553.5 Da PI: 9.558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06578.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	329	348	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk+F ++ L+ H++++ Sme2.5_06578.1_g00002.1 329 CSQCGKPF-KPEKLHAHMKSC 348 ******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	3.9E-41	15	194	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MEGQNQGGGE VRRLHIIYFL SRKGRVEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP 60 ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE IPSTIPIKAV KCGENEVTTT 120 MQKEKTAQED QNQDFLMDSS KKIPSEIEEE EEESHNFASE TSTLTTDSPK FQEEVNNSSS 180 FSSSSVSSFG SMKPKKKTED QNTNDKKSEK NPKLNKSRSY SNGASSIFRN LITCGAVDTN 240 DSGIIPLKRN NNSVSNAAAP EKTVSFSSEI CKADKIGGSQ RIFATAWNQQ QTNGRKSCDG 300 AFSMSKNKNE FGSRRSVSAN YKPINGPNCS QCGKPFKPEK LHAHMKSCKG MKALAKGANS 360 AATEKTSRDA AKVDSVSGNC LAH

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MEGQNQGGGE VRRLHIIYFL SRKGRVEHPH LIRVHHFSRN GIRLRDVKRW LGELRGKDMP  60
ESFAWSYKRK YKTGYVWQDL LDEDLITPIS DNEYVLKGSE IPSTIPIKAV KCGENEVTTT  120
MQKEKTAQED QNQDFLMDSS KKIPSEIEEE EEESHNFASE TSTLTTDSPK FQEEVNNSSS  180
FSSSSVSSFG SMKPKKKTED QNTNDKKSEK NPKLNKSRSY SNGASSIFRN LITCGAVDTN  240
DSGIIPLKRN NNSVSNAAAP EKTVSFSSEI CKADKIGGSQ RIFATAWNQQ QTNGRKSCDG  300
AFSMSKNKNE FGSRRSVSAN YKPINGPNCS QCGKPFKPEK LHAHMKSCKG MKALAKGANS  360
AATEKTSRDA AKVDSVSGNC LAH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	5e-76	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006359179.1	0.0	PREDICTED: protein UPSTREAM OF FLC
TrEMBL	A0A0V0I272	0.0	A0A0V0I272_SOLCH; Uncharacterized protein
STRING	PGSC0003DMT400079895	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5206	13	15