PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06668.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 211aa MW: 24025.2 Da PI: 8.4766

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06668.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00012	18	66	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e+E++RR+ +++ +eL +llP + s+ + + Av+YI sL Sme2.5_06668.1_g00002.1 18 RKEVEKNRRNYMKNLCNELYSLLPItHV---SQEtMVMQDKIDAAVKYIESL 66 589*********************8553...222233333334566666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-8	5	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.134	13	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-7	17	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDGGRSSTSA PARAKLERKE VEKNRRNYMK NLCNELYSLL PITHVSQETM VMQDKIDAAV 60 KYIESLKMKL EKNKRQLEEL KMGPKRSQPL NATNEPGPIA KSAPEIEFHE MGPNMVVVLI 120 TSLYNIAITS FDYAMRKVLK LCIQAFHHSM EMETLCCRFL MKLRYCFGIL PKINHSLILN 180 CLGPSCAFPG RSGSCDVDVI EDCFISSIFY F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015161047.1	1e-51	PREDICTED: uncharacterized protein LOC107059131
TrEMBL	A0A2G3BCS9	1e-49	A0A2G3BCS9_CAPCH; Uncharacterized protein
STRING	Solyc10g008270.2.1	6e-50	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5297	14	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-11	bHLH family protein