PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06691.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 306aa    MW: 34790.9 Da    PI: 8.1679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06691.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.7e-06121141323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C+ Cg sF  + +L++H+++H
  Sme2.5_06691.1_g00002.1 121 CEECGVSFHKPAHLQQHMQSH 141
                              *******************99 PP
2zf-C2H211.50.00095147171123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              ++C+  dC  s+  k++L+rH+ +H
  Sme2.5_06691.1_g00002.1 147 FVCHvdDCQSSYHGKDHLTRHLLLH 171
                              89********************998 PP
3zf-C2H211.40.00098176201123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              ++Cp   C+ +Fs +  ++rH +  H
  Sme2.5_06691.1_g00002.1 176 FQCPvdGCKSTFSFQGVMTRHVKEmH 201
                              89********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0097119141IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256119146IPR007087Zinc finger, C2H2
PROSITE patternPS000280121141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5121137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.9E-9132173No hitNo description
Gene3DG3DSA:3.30.160.604.2E-11138173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.995147176IPR007087Zinc finger, C2H2
SMARTSM003550.33147171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280149171IPR007087Zinc finger, C2H2
SuperFamilySSF576675.7E-5158221No hitNo description
SMARTSM003550.0052176201IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.767176206IPR007087Zinc finger, C2H2
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAKTLQQWLR DKPVVSKSSG LRSGVIIKVK RIALDNRSTR TIIEEPRILT SGLDAIEIVV  60
AFGFYLVTAV MEILRQLYVT EIWPYLVPFH SLGFGIRKWD EIESRKDEAT EDAKRKEGNI  120
CEECGVSFHK PAHLQQHMQS HSLERPFVCH VDDCQSSYHG KDHLTRHLLL HQGKLFQCPV  180
DGCKSTFSFQ GVMTRHVKEM HDQSASPVVE LPKEYVCSEA GCGKGDFEEA DEQFLSRPRG  240
GRKREPTLIE SIMRKRITPP SGTDPVFNRT SESLSWLRSA YSDNQMYGLK SLLSRIRVGL  300
ECLLAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf3_A1e-13120202590TRANSCRIPTION FACTOR IIIA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8821791e-104DQ882179.1 Lycopersicon esculentum transcription factor IIIA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543989.16e-71PREDICTED: transcription factor IIIA isoform X1
SwissprotQ84MZ42e-34TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G3BI736e-70A0A2G3BI73_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000185591e-69(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-36transcription factor IIIA