PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06719.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CAMTA
Protein Properties Length: 316aa    MW: 35836.2 Da    PI: 5.6927
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06719.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11421.7e-4458736118
                     CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                               gsl+L++rk++ryfrkDG+sw+kk+dgktv+E+he+LK g+++vl+cyYah+een++fqrr+yw+Leee+++ivlvhy+evk
  Sme2.5_06719.1_g00002.1   5 GGSLFLFDRKVLRYFRKDGHSWRKKRDGKTVKEAHERLKAGSIDVLHCYYAHGEENENFQRRSYWMLEEEMSHIVLVHYREVK 87 
                              69******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010764.8E-43187IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143761.208192IPR005559CG-1 DNA-binding domain
PfamPF038599.1E-37585IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVLPGGSLFL FDRKVLRYFR KDGHSWRKKR DGKTVKEAHE RLKAGSIDVL HCYYAHGEEN  60
ENFQRRSYWM LEEEMSHIVL VHYREVKGNR TNFSRIREPQ QVTPDLQETE EDVHSSEVDS  120
SASTKFYPND YQVNSQVTET TSLSSAQASE YEDAESVYNQ HPTSGFHSFL DAQPSAGDGL  180
AVPYHPIPFS NDQVQFAGSS GLTFSSIPPG NENRNTANTY MPSRNLDFPS WEAISIDNPV  240
AYQSLHFQPS GQSGANNLMH EQGNTAMGQM FLNDFKRQEH ENHIDGLGNW QPSRLGAKTD  300
DSKPFILRQQ AEPTPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1708380.0GU170838.1 Solanum lycopersicum cultivar Rutgers calmodulin-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355338.10.0PREDICTED: calmodulin-binding transcription activator 3-like
TrEMBLA0A3Q7G6830.0A0A3Q7G683_SOLLC; Uncharacterized protein
STRINGSolyc04g056270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.25e-60signal responsive 1