PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06915.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 315aa    MW: 36025.1 Da    PI: 4.3252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06915.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.4e-105633698
                             EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             + le +sg++Wev++  + + g+++l++GW++F +   +++g f++F ++ rs f  +v++f+
  Sme2.5_06915.1_g00004.1  5 VYLEVPSGEVWEVEV--QHSEGHIWLAEGWQDFSDYYSIRQGHFLMFGYNARSHF--NVTIFD 63
                             78999**********..999999**************************999999..999987 PP
2B349.48.3e-16217298489
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               + ps+ ++ + l++p kfa+ + +   +s  l+l+ +   sW+vk+   +k+ +   t GWk Fv +n+Lk gD++v++++++ +
  Sme2.5_06915.1_g00004.1 217 FMHPSYISRPHYLYIPLKFARMYLMR--NSGNLVLRVPGKGSWSVKCMLLRKDAK--VTCGWKAFVLDNKLKYGDVCVLEVINDPK 298
                              4567777777*************545..3447***************87777755..79*********************988644 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.167165IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-12565IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-13565IPR015300DNA-binding pseudobarrel domain
CDDcd100172.28E-10563No hitNo description
Gene3DG3DSA:2.40.330.102.1E-21206300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-21207298IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-18212308No hitNo description
SMARTSM010193.5E-11213310IPR003340B3 DNA binding domain
PROSITE profilePS5086312.083214310IPR003340B3 DNA binding domain
PfamPF023621.5E-13216296IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLNPVYLEVP SGEVWEVEVQ HSEGHIWLAE GWQDFSDYYS IRQGHFLMFG YNARSHFNVT  60
IFDMSAVEIE YPTAEIESDD SLDISVMVEH SSENLSHDPL VQERKRKSQE GEDEDDIPVE  120
HQTNLIKEEE SQGNVVSLGK EGEDEDDIPV EHQTNLIKEE ESQENVVSLE INEGFEEHEQ  180
QSNIVTNKSE AESDEEIADN YQRAKAFKSK NPFIVSFMHP SYISRPHYLY IPLKFARMYL  240
MRNSGNLVLR VPGKGSWSVK CMLLRKDAKV TCGWKAFVLD NKLKYGDVCV LEVINDPKLS  300
LIDVTIFPGV SDGTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1420430739140B3 domain-containing transcription factor VRN1
4i1k_B4e-1420430739140B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154041e-133AC215404.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0163K16, complete sequence.
GenBankHG9755141e-133HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344812.11e-174PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM0ZSN01e-172M0ZSN0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000071991e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-33B3 family protein