PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06925.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 709aa MW: 81199 Da PI: 9.0666

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06925.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.7	5.4e-25	229	315	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +Y++YA ++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +++ r gCka++ vkke++gkw v+kl ++HnH Sme2.5_06925.1_g00002.1 229 CYSTYAIHLGFVMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--SGKKKCRAIRAGCKAMIIVKKEQSGKWIVAKLMKDHNH 312 7***************************************9988..888999999*************************** PP FAR1 88 ela 90 +l+ Sme2.5_06925.1_g00002.1 313 PLV 315 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-23	229	315	IPR004330	FAR1 DNA binding domain
SuperFamily	SSF56219	1.15E-5	662	708	IPR005135	Endonuclease/exonuclease/phosphatase

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MVTSYQVIEE STTQLVDGHD HPPSKVIKVS TPQLVDGLPP LSEAIKVSTP QLVDEHDHPP 60 SKEIEVSIPQ LVDDLPSPSE AIEVLTPQLV DRHDHPLLKM IEVSTPQLVD GLPAPSEIGI 120 SPYKTQLIEI DHFMSIESLE EYRVPKEQVR NDYGNNGGLL YNHWLIGDYC RIRKTPKADE 180 INYATDDGII ESSSRNEFTT SGGVEPEGRL NMEPYVGMEF ESEEAAKACY STYAIHLGFV 240 MRVDAFRRSM RNGELVWRRL VCNKEGFSKS RQSQSGKKKC RAIRAGCKAM IIVKKEQSGK 300 WIVAKLMKDH NHPLVVKPVN THKGAILCKT PSYDLARDES RAEIWYNCTE RGRKMKSTTS 360 FSQKSMERIC SILKEASKVK GNAVRRWRRQ EHATHLFCAR NFNNKGRYIS IISVHSKKRA 420 VSIVPEISFN AGWLDFATKI EKFICYKANK TVKKNYRMFD KEITYVETVK RSKWSFEEIN 480 SAVIKEGNAN FIDGGLNQRR NEGRWLWKNQ GIRLQWWSLM NVFKVVGDFC GGWVKTEEET 540 ELRNHLQWAR ILAKPTILPF WRRLDKEFGV HFIGCGEVAL NLFMIIDNKR EATEKVAGAI 600 VPITPSDKIP KELEKREPSS NFISYGTRSR EGKLRSLNGI YLVSMLLTIE TKEKYGENWG 660 AVRGLFSGPW VVAGDFNVVR HPSEKKNYNR LNKAMEDFSD FIEDMELYH

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MVTSYQVIEE STTQLVDGHD HPPSKVIKVS TPQLVDGLPP LSEAIKVSTP QLVDEHDHPP  60
SKEIEVSIPQ LVDDLPSPSE AIEVLTPQLV DRHDHPLLKM IEVSTPQLVD GLPAPSEIGI  120
SPYKTQLIEI DHFMSIESLE EYRVPKEQVR NDYGNNGGLL YNHWLIGDYC RIRKTPKADE  180
INYATDDGII ESSSRNEFTT SGGVEPEGRL NMEPYVGMEF ESEEAAKACY STYAIHLGFV  240
MRVDAFRRSM RNGELVWRRL VCNKEGFSKS RQSQSGKKKC RAIRAGCKAM IIVKKEQSGK  300
WIVAKLMKDH NHPLVVKPVN THKGAILCKT PSYDLARDES RAEIWYNCTE RGRKMKSTTS  360
FSQKSMERIC SILKEASKVK GNAVRRWRRQ EHATHLFCAR NFNNKGRYIS IISVHSKKRA  420
VSIVPEISFN AGWLDFATKI EKFICYKANK TVKKNYRMFD KEITYVETVK RSKWSFEEIN  480
SAVIKEGNAN FIDGGLNQRR NEGRWLWKNQ GIRLQWWSLM NVFKVVGDFC GGWVKTEEET  540
ELRNHLQWAR ILAKPTILPF WRRLDKEFGV HFIGCGEVAL NLFMIIDNKR EATEKVAGAI  600
VPITPSDKIP KELEKREPSS NFISYGTRSR EGKLRSLNGI YLVSMLLTIE TKEKYGENWG  660
AVRGLFSGPW VVAGDFNVVR HPSEKKNYNR LNKAMEDFSD FIEDMELYH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-147	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-147	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-43	FAR1 family protein