PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07146.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARR-B
Protein Properties Length: 548aa    MW: 60615.7 Da    PI: 7.092
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07146.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.23.8e-28180233155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              kpr++W+ eLH++F++av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Sme2.5_07146.1_g00002.1 180 KPRVVWSMELHQQFLRAVRQL-GNDKAVPKKILELMNVPGLTRENVASHLQKYRL 233
                              79*******************.********************************8 PP
2Response_reg77.83.9e-26261341109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+ + + +++++l k +y +v+++  +e al +l+ek+  +D+++ D+ mp+mdG++ll++i  e  +lp+i+++a +++ 
  Sme2.5_07146.1_g00002.1  26 VLVVDDDLTCLAIMKKMLWKCRY-QVTACNAAEVALSILREKKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKH 109
                              89*********************.***************999999**********************6654.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                               +le +  Ga d+l Kp+ +e+l +
  Sme2.5_07146.1_g00002.1 110 VVLEGVTHGAYDYLIKPVRIEALKN 134
                              *********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.7E-1437541IPR017053Response regulator B-type, plant
SuperFamilySSF521723.27E-3423154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.4E-4123169No hitNo description
SMARTSM004489.8E-2724136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.94225140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2226134IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.62E-2527139No hitNo description
PROSITE profilePS5129413.521177236IPR017930Myb domain
SuperFamilySSF466895.73E-20177237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-29178238IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-25180233IPR006447Myb domain, plants
PfamPF002491.3E-9182232IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MNIGSGSGCW KSGDVLPEEF PVGLRVLVVD DDLTCLAIMK KMLWKCRYQV TACNAAEVAL  60
SILREKKNGF DIVISDVHMP DMDGFKLLEH IGLEMDLPVI MMSADDSKHV VLEGVTHGAY  120
DYLIKPVRIE ALKNIWQHIV RKKKSEGDRQ QKPSEDVDNS KKRKEEEEEA EERDDTSPKK  180
PRVVWSMELH QQFLRAVRQL GNDKAVPKKI LELMNVPGLT RENVASHLQK YRLYLRRVSS  240
ESQHQNGLNN SFMGCADTTL ASSFNGLDLQ AIATAGHIPT QGLATLGRCA SKSMPLVDQR  300
HLFSSENSSG QQLNSSNNIT QLLHGIPTTM PQYNNSVLMR MPQAQPGANN GSQVSRLQLS  360
MQQSLSSEGI VLAQSRIVDS ARGRVYNPVS QQPSMVDLLV IEACLTNRSG MSTLTNRGML  420
QEEADSDIKG SRGFPSNYDI VNQLHQPKLQ NWGLQNVGST FDTYHHPSIQ GTQGVSSSGH  480
VGGSQLNSVG GNMLAVTAER FRGPDHQSTN FLEQFGQDNL MSVFLKQQGN VGPVQTEFAS  540
MGILQFKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22176239164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141163KKKSEGDRQQKPSEDVDNSKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015060321.10.0two-component response regulator ARR2
SwissprotQ9ZWJ91e-137ARR2_ARATH; Two-component response regulator ARR2
TrEMBLM1CEN40.0M1CEN4_SOLTU; Two-component response regulator
STRINGPGSC0003DMT4000658350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-118response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]