PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07178.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 130aa    MW: 15434.8 Da    PI: 10.5668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07178.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEd +l+ +++++G+ +W+  +++ g+ R++k+c++rw +yl
  Sme2.5_07178.1_g00001.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLERCGKSCRLRWMNYL 61
                             799*******************************************97 PP
2Myb_DNA-binding61.41.9e-1967111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++ 
  Sme2.5_07178.1_g00001.1  67 RGNYTKEEDEIILKLHAQLGNK-WSRIAVHLP-GRSDNEIKNHWHTT 111
                              899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.709961IPR017930Myb domain
SuperFamilySSF466892.15E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002497.5E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241568IPR009057Homeodomain-like
CDDcd001671.45E-81661No hitNo description
PROSITE profilePS5129426.62262116IPR017930Myb domain
SMARTSM007179.7E-1866114IPR001005SANT/Myb domain
PfamPF002496.6E-1767111IPR001005SANT/Myb domain
CDDcd001672.03E-1169112No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2769115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLERCG KSCRLRWMNY  60
LRPNIKRGNY TKEEDEIILK LHAQLGNKWS RIAVHLPGRS DNEIKNHWHT TLKKHVMVGD  120
CCSLARKIRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-42HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887851.11e-77transcription factor MYB15-like
SwissprotQ9FJP24e-51MYB53_ARATH; Transcription factor MYB53
TrEMBLA0A3Q7HEC13e-76A0A3Q7HEC1_SOLLC; Uncharacterized protein
STRINGSolyc07g053230.2.16e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.15e-54myb domain protein 107
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]