PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_07251.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SRS

Protein Properties

Length: 326aa MW: 35258.9 Da PI: 8.0241

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_07251.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218	2e-67	107	254	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++ +++++++kr+re+ ++s+l s Sme2.5_07251.1_g00004.1 107 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQQQGQNNNNKQKRQRED--PSASSLVS 190 5789*******************************************************999999999999987..78899999 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l+s+++ le+ ++P++v+++avf+c+++ss++d+e++laYq+a sigGhvfkGiLydqG e+ Sme2.5_07251.1_g00004.1 191 PRLPSNTTG--LEVGKFPAKVRTSAVFQCIQMSSIEDNEDQLAYQAAASIGGHVFKGILYDQGHES 254 999999755..89999*********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.0E-64	109	253	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.7E-27	111	153	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.3E-23	204	251	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MANFFSLGGG RSSSPAVPTE ISQENNWFLY RNDHHTQEIS NTYKGFELWQ SGNTPQQQQF 60 RHPIYPLQDL YSTDVGLGVG PSRTAFDIST GDDEASRSGL VMMKSAGGGI SCQDCGNQAK 120 KDCQHMRCRT CCKSRGFQCQ THVKSTWVPA AKRRERQQQL AALQQQQQGQ NNNNKQKRQR 180 EDPSASSLVS PRLPSNTTGL EVGKFPAKVR TSAVFQCIQM SSIEDNEDQL AYQAAASIGG 240 HVFKGILYDQ GHESQYNNMG GGDTSSGGSA GVQHHHNSAA IATPTAASGD ATAAGPSNFL 300 DPSLFPASLS TFMVAGTQFF PPSRSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	179	KQKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC331910	0.0	KC331910.1 Solanum lycopersicum expression of terpenoids 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346983.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	1e-178	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	M1B9B5	0.0	M1B9B5_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400040107	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	8e-62	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]