PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07259.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19816.5 Da    PI: 5.4164
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07259.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-171657243
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                              i+nks+ qvtfskRr+g++KK +ELS+LC+ + a +if+++
  Sme2.5_07259.1_g00004.1 16 MIQNKSQLQVTFSKRREGLFKKDYELSTLCGGQSATVIFAPN 57
                             79*******************************999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-14769IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.815757IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-17888IPR002100Transcription factor, MADS-box
CDDcd002662.54E-20895No hitNo description
PRINTSPR004043.9E-9929IPR002100Transcription factor, MADS-box
PfamPF003195.8E-171757IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-92944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVKPCGRGRK KTGREMIQNK SQLQVTFSKR REGLFKKDYE LSTLCGGQSA TVIFAPNTGD  60
NKTTVYSLGH PDVNSVIDKF LGLNVASETN DDVVDNTHVE RLNEVKALLE EEKARGKMLD  120
EKIKARGSFE ELNSAQLGEL IEKFEFIMEK VEWIARQQEE CNIQFPYSTL GDALAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340411.14e-39PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM0ZKW11e-37M0ZKW1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000029202e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-22AGAMOUS-like 62