PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07370.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 527aa    MW: 59173.7 Da    PI: 6.5546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07370.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004457479123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp C+++F++   L  H r+H
  Sme2.5_07370.1_g00001.1 457 HECPFCDRVFKSGQALGGHKRSH 479
                              78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.951936IPR007087Zinc finger, C2H2
PfamPF139127.4E-7931IPR007087Zinc finger, C2H2
SMARTSM003550.048931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.54E-7931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-789116No hitNo description
SMARTSM003550.1594116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1294121IPR007087Zinc finger, C2H2
PfamPF139124.6E-795118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-7374398No hitNo description
PfamPF139123.0E-8376400IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536376403IPR007087Zinc finger, C2H2
SMARTSM003556.2376398IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280378398IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-7452479No hitNo description
PROSITE profilePS501579.432457479IPR007087Zinc finger, C2H2
PfamPF139123.6E-10457479IPR007087Zinc finger, C2H2
SMARTSM003550.014457479IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280459479IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEEDQDLKFV CKLCNKKFPC GKSLGGHMRS HVLANSTEFE ENGEANLEKF QSWSPHQSKF  60
DVGGHSGYGL RENPKKTWRA VDSSSSPLLP PQERVCQQCG KVFQSMKALC GHMACHSEKL  120
VMDSHSDTET DEEEEEPKIR SSKTKRYKGI VVKSSNYSLV NNVNYGSSSV SEIDEQDQEE  180
VVAKCLMMLS RDSGNWNGVN SVVESSDNNS VVLETKSSST DMKFGRKDKM KCVNNQNETP  240
RIKRREERNL KLSVLDVEAE SESSDSGYFL DENTIVESDI SVDRNGTSKW STSQMSHAVW  300
CDESVIDKGK GLNTTKKTAE HELDDYPLAS YAEKCEARKR MKDSSYHPEL GNKSFKKIKL  360
GPRSPEGCKT VQKKKYECLN CKKSFNSYQA LGGHRPCHKK TNAYLESING TGESSVDANC  420
DDKQREAFSN RKPASDAAKD LSYNPEKKIK PKKSKGHECP FCDRVFKSGQ ALGGHKRSHF  480
IVGNEQNMNQ SSAVKKVDDL FDLNLPAPVD DDDDDDDDDE HAHLMSW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-159HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348710.10.0PREDICTED: uncharacterized protein LOC102602723
TrEMBLM1CQY50.0M1CQY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000727960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.19e-58C2H2-like zinc finger protein