PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07709.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 596aa    MW: 67890 Da    PI: 8.7366
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07709.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-1316104498
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              v ++++v   g l lp +f++ehg +   + t++l  +    W v +  +k +++++l +GW+eF + + ++   f++Fk+ ++s+
  Sme2.5_07709.1_g00004.1  16 VIVQPSVIDDGKLPLPDRFVQEHGDE--LPDTVKLIVPGDDFWFVGV--KKADKMIWLHDGWQEFMEHHSVCCWYFLLFKYGQDSC 97 
                              56789999***************966..888****************..********************************999** PP

                              E..EEEEE- CS
                       B3  90 felvvkvfr 98 
                              f  +v++f+
  Sme2.5_07709.1_g00004.1  98 F--NVHIFD 104
                              *..999987 PP
2B3642.3e-203013821296
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                              ++ ++ +p  f++++  k  +s  + l+d++g++W+v++   +k+ +++l+kGW +Fv +ngL +gD++vF+l+++    el++kv
  Sme2.5_07709.1_g00004.1 301 RNYIVNIPAAFVRKYIPK--TSGLIELQDTDGNKWNVRC--IRKKHTMFLSKGWLNFVTDNGLVVGDVCVFELIKDlLADELMLKV 382
                              445668*********533..4559***************..88888899************************9988777777766 PP
3B363.63.1e-20499587998
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS...SEE. CS
                       B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr...sefe 91 
                              +v ++ +l +p +f+++h++k+ e+  ++l+d +g++W+  +   +++++++l+kGW +Fv++ngL  gD +vF+l+++   +e +
  Sme2.5_07709.1_g00004.1 499 HVVRNYILNIPADFVRDHMSKTSEP--IKLQDCDGNKWSAHC--IRRRSSTFLSKGWINFVRDNGLVLGDACVFELIKDiqaDELT 580
                              7888999***********9997666..***************..77777799***********************99766134555 PP

                              .EEEEE- CS
                       B3  92 lvvkvfr 98 
                              l+v++fr
  Sme2.5_07709.1_g00004.1 581 LKVHIFR 587
                              6666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-1812104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-1712104IPR015300DNA-binding pseudobarrel domain
CDDcd100175.99E-1213104No hitNo description
PROSITE profilePS5086310.40513106IPR003340B3 DNA binding domain
SMARTSM010194.2E-914106IPR003340B3 DNA binding domain
PfamPF023628.3E-1016104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-27283388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-26285387IPR015300DNA-binding pseudobarrel domain
CDDcd100172.29E-23288386No hitNo description
SMARTSM010192.3E-18290386IPR003340B3 DNA binding domain
PROSITE profilePS5086315.82290388IPR003340B3 DNA binding domain
PfamPF023622.1E-18297382IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-26483589IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-26484588IPR015300DNA-binding pseudobarrel domain
CDDcd100173.92E-24489587No hitNo description
SMARTSM010191.7E-16491589IPR003340B3 DNA binding domain
PROSITE profilePS5086315.58491589IPR003340B3 DNA binding domain
PfamPF023626.1E-18498588IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MMESCSNPCS SASFYVIVQP SVIDDGKLPL PDRFVQEHGD ELPDTVKLIV PGDDFWFVGV  60
KKADKMIWLH DGWQEFMEHH SVCCWYFLLF KYGQDSCFNV HIFDLAATEI DYQFRSHGNA  120
KSHDFFHDLS RGKNKTVGDK GDTISVEIVD PLETEQEPES SAKSSELPHR AKRRKTASGK  180
IKLLRCYETR SRTNNLHDNG RILKAKNLNI SSNSSLTKPL GRKLVRQRMK TPIHSAASNG  240
DARKSFTSQQ PEESVGRGRY DLRVRGQLKA SEPSRALEAA KMFIPENPYF LQILEKYNIE  300
RNYIVNIPAA FVRKYIPKTS GLIELQDTDG NKWNVRCIRK KHTMFLSKGW LNFVTDNGLV  360
VGDVCVFELI KDLLADELML KVHMFRSKVE ENSTNIHTGS ISEPTLSTRK NSVVQFDESK  420
HTESSDAFGP VSSDRTNHKT DTKNSLTRQQ QEKSVVHGSS DNRCKIGRPR ASEASRATNA  480
AKMFTPENPY FVMTLGEYHV VRNYILNIPA DFVRDHMSKT SEPIKLQDCD GNKWSAHCIR  540
RRSSTFLSKG WINFVRDNGL VLGDACVFEL IKDIQADELT LKVHIFRNEV EQKSTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-2026858727141B3 domain-containing transcription factor VRN1
4i1k_B3e-2026858727141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774064.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A3Q7HCR60.0A0A3Q7HCR6_SOLLC; Uncharacterized protein
STRINGXP_009613233.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-46B3 family protein