PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_07856.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 944aa MW: 106497 Da PI: 9.5319

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_07856.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.5e-09	48	83	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 rW+ e+ ++++a +++G++ Wk++a+ + Rt++++ Sme2.5_07856.1_g00002.1 48 RWSDEDLTRFYQAYRKYGKD-WKKVASAVK-SRTAEMV 83 8***************99.****9.*9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.13	44	96	IPR017884	SANT domain
SuperFamily	SSF46689	5.61E-10	44	90	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-4	45	92	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-7	48	83	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-5	48	84	IPR009057	Homeodomain-like
CDD	cd00167	2.17E-5	48	83	No hit	No description
SMART	SM01135	1.3E-55	696	797	IPR033471	DIRP domain
Pfam	PF06584	6.3E-32	696	796	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MAPAKKSRSI KKRLSPTTEI SPSKDGNGDN AKKSLQRKRK LSDMLGHRWS DEDLTRFYQA 60 YRKYGKDWKK VASAVKSRTA EMVEALYTMN RPVTGQLQFD DCFCGVIMAY LSLPEGTASV 120 AGLIAMMTDH YCNLAASDSE QESNEDAGMA RKPQKSAWGK VHPNISKTSE MTSSAVAASH 180 GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SYDNPMDEKY FSPSRQSLKP QADDTDDDVK 240 IALVLTEASQ RGGSPQVSKT PNRRTDGAMT SPIGTAERKR AKMDMGNGKL LSNEVDEEEG 300 SMEADTGELM QYKNDSRETG TVGRTTQKRK KPYGKKLEVD DSGDNYFDDI KEACSGTEEG 360 QRLGAVRSKL ETTNEKNSRA SLQGPRKRSK KVLSGRDESS AFDALQTLAD LSLMMPTEEN 420 EDGKGVTWRG RGRLKKYWGE VIRQDITQLH IIEDLTIDRK EWRSHIRVEE SMIQVKDEID 480 DHVDESGSLE AVPAHRQRDK RGSPGVKSRW SQPLSKFEVA SSMTSKHGKV TSTDVNDVPE 540 TKQARRAQKA MSSKGRKAEG HVNYDVTESQ EAAAKEASKK STSKDKRSYL VSPKLIKDQE 600 QSSCADPRTE RSDSAQSTAQ IPVENQVDLP TKVRSRRKMD PKRPQRQKDL KIPDKSLDDT 660 SASFTALCDK AFSLKKRISS CLSNHQVRRW CTYEWFYSAI DYPWFAKREF VEYLYHVGLG 720 HVPRLTHVEW GVIRSSLGKP RRFSEQFLNE EKEKLNQYRE SVRSHYTELR EGTREGLPTD 780 LARPLSVGQR VIAIHPKTRE IHDGNVLTVD HSRCRVQFDR PELGVEFVMD IDCMPLNPFE 840 NMPTLLKRHA DAVDKFFMSF NELKMNARAN EFMKLPACDS MENGDLSSHF LPPSHPISNL 900 LKQTKKYWPL GSLAFGVCGN LCFGFCVLVC PIKQWAEAYS TYQA

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MAPAKKSRSI KKRLSPTTEI SPSKDGNGDN AKKSLQRKRK LSDMLGHRWS DEDLTRFYQA  60
YRKYGKDWKK VASAVKSRTA EMVEALYTMN RPVTGQLQFD DCFCGVIMAY LSLPEGTASV  120
AGLIAMMTDH YCNLAASDSE QESNEDAGMA RKPQKSAWGK VHPNISKTSE MTSSAVAASH  180
GCLTLLKKKR SGGSRPRAVG KRTPRFPVSF SYDNPMDEKY FSPSRQSLKP QADDTDDDVK  240
IALVLTEASQ RGGSPQVSKT PNRRTDGAMT SPIGTAERKR AKMDMGNGKL LSNEVDEEEG  300
SMEADTGELM QYKNDSRETG TVGRTTQKRK KPYGKKLEVD DSGDNYFDDI KEACSGTEEG  360
QRLGAVRSKL ETTNEKNSRA SLQGPRKRSK KVLSGRDESS AFDALQTLAD LSLMMPTEEN  420
EDGKGVTWRG RGRLKKYWGE VIRQDITQLH IIEDLTIDRK EWRSHIRVEE SMIQVKDEID  480
DHVDESGSLE AVPAHRQRDK RGSPGVKSRW SQPLSKFEVA SSMTSKHGKV TSTDVNDVPE  540
TKQARRAQKA MSSKGRKAEG HVNYDVTESQ EAAAKEASKK STSKDKRSYL VSPKLIKDQE  600
QSSCADPRTE RSDSAQSTAQ IPVENQVDLP TKVRSRRKMD PKRPQRQKDL KIPDKSLDDT  660
SASFTALCDK AFSLKKRISS CLSNHQVRRW CTYEWFYSAI DYPWFAKREF VEYLYHVGLG  720
HVPRLTHVEW GVIRSSLGKP RRFSEQFLNE EKEKLNQYRE SVRSHYTELR EGTREGLPTD  780
LARPLSVGQR VIAIHPKTRE IHDGNVLTVD HSRCRVQFDR PELGVEFVMD IDCMPLNPFE  840
NMPTLLKRHA DAVDKFFMSF NELKMNARAN EFMKLPACDS MENGDLSSHF LPPSHPISNL  900
LKQTKKYWPL GSLAFGVCGN LCFGFCVLVC PIKQWAEAYS TYQA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243718	1e-139	AC243718.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-7h19 map 1, complete sequence.
GenBank	HG975440	1e-139	HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBank	HG975513	1e-139	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542039.1	0.0	PREDICTED: protein ALWAYS EARLY 3-like isoform X1
TrEMBL	A0A2G2XRA8	0.0	A0A2G2XRA8_CAPBA; Uncharacterized protein
STRING	Solyc01g067560.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-102	DNA binding