PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07900.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24164.5 Da    PI: 7.1808
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07900.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.45.2e-202574149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                             k+i n+ +r+vtfskRr g++KKA+EL++L++ae+a+++ s ++ +l+++
  Sme2.5_07900.1_g00001.1 25 KPIANQNKRHVTFSKRRLGLFKKASELCILTGAEIAIVVQSlKRRRLFTF 74
                             689************************************99344567766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.031765IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-231777IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-221889IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-121939IPR002100Transcription factor, MADS-box
PfamPF003199.3E-202774IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-123954IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-125475IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MMNINNNTIA VTVKKTQGRR KIAIKPIANQ NKRHVTFSKR RLGLFKKASE LCILTGAEIA  60
IVVQSLKRRR LFTFGHPSPD AVINRYLTGK EEECAGDEQF DFVQQSNEYD SQICRELEAE  120
KKNKEIIDES KMVNGSSNNN GGFWWNESTD DMGIEELDKF VCALEELKKR VNMRCDELCG  180
SSSLAPSTST MNQAIDYCAS IVPFDFNYPF IIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16670KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356276.11e-106PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM1CB921e-104M1CB92_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000637941e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-30AGAMOUS-like 62