PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_07952.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 134aa    MW: 14894.2 Da    PI: 10.6896
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_07952.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-281059251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             ri+n++ rqvtfskRrng+lKKA+EL +LCdae  viifsstgklyeys+
  Sme2.5_07952.1_g00001.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAETGVIIFSSTGKLYEYSN 59
                             8***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.824161IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27264IPR002100Transcription factor, MADS-box
CDDcd002651.06E-34260No hitNo description
PRINTSPR004042.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AETGVIIFSS TGKLYEYSNT  60
RGVKQGDSLS GAFFIIAAEA LTRALNQLNK NSSYNGFTIS SKARKRMIES DLLCKSSSVE  120
QRKIAVSLVF CEKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18160160MEF2C
5f28_B6e-18160160MEF2C
5f28_C6e-18160160MEF2C
5f28_D6e-18160160MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-80HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-80HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc12g088080.1.12e-34(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.11e-33AGAMOUS-like 44