PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08121.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17684.2 Da    PI: 9.8137
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08121.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1014.3e-32959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Sme2.5_08121.1_g00001.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                             79***********************************************96 PP
2K-box75.71.2e-2581145872
                    K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                              +++++++++ ++e+ +Lk+++e Lqr+qR++lGedL++Ls k+L+qLe+qLe+slk+iRs+K+ l
  Sme2.5_08121.1_g00001.1  81 NQSATDTQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLSTKDLEQLENQLESSLKQIRSRKDTL 145
                              3688999*******************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.529161IPR002100Transcription factor, MADS-box
CDDcd002653.06E-43278No hitNo description
SuperFamilySSF554551.44E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.6E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-333859IPR002100Transcription factor, MADS-box
PfamPF014868.5E-2183145IPR002487Transcription factor, K-box
PROSITE profilePS5129712.17887152IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST  60
SSMVKTIEKY QRCSYATLEA NQSATDTQNN YHEYLRLKAR VELLQRSQRN FLGEDLGTLS  120
TKDLEQLENQ LESSLKQIRS RKDTLDSWQV LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21187182MEF2 CHIMERA
6byy_B2e-21187182MEF2 CHIMERA
6byy_C2e-21187182MEF2 CHIMERA
6byy_D2e-21187182MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1298750.0AF129875.1 Capsicum annuum MADS box transcription factor MADS1 (MADS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311550.13e-98MADS-box protein CMB1-like
SwissprotQ7Y0401e-97EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A2G3CYY95e-97A0A2G3CYY9_CAPCH; Agamous-like MADS-box protein AGL3
STRINGSolyc03g114840.2.15e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-67MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]