PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08155.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 257aa    MW: 29162.4 Da    PI: 5.4565
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08155.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-184597456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++f++eq++ Le++F ++ ++  +++ + A++lgL+ rqV +WFqN+Ra++k
  Sme2.5_08155.1_g00006.1 45 TRRFSDEQIKSLETMFDMETKLEPRKKLQVARELGLQPRQVAIWFQNKRARWK 97
                             468*************************************************9 PP
2HD-ZIP_I/II122.52.1e-3944135293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              + rr+s+eq+k+LE++F++e+kLep++K ++areLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L+ke+++L
  Sme2.5_08155.1_g00006.1  44 NTRRFSDEQIKSLETMFDMETKLEPRKKLQVARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYESLKKEKQSL 129
                              569*********************************************************************************** PP

              HD-ZIP_I/II  88 reelke 93 
                                +l++
  Sme2.5_08155.1_g00006.1 130 LIQLQK 135
                              999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1821101IPR009057Homeodomain-like
PROSITE profilePS5007116.5683999IPR001356Homeobox domain
SMARTSM003891.3E-1542103IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.4E-1845106IPR009057Homeodomain-like
PfamPF000469.1E-164597IPR001356Homeobox domain
CDDcd000864.75E-1446100No hitNo description
PRINTSPR000314.4E-57079IPR000047Helix-turn-helix motif
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PRINTSPR000314.4E-57995IPR000047Helix-turn-helix motif
PfamPF021835.3E-1799138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MFDAGEFSPT SSAAALSAEC FSSSSCFSSL SSSKKKSKMM SSKNTRRFSD EQIKSLETMF  60
DMETKLEPRK KLQVARELGL QPRQVAIWFQ NKRARWKSKQ LERDYSILKS NYDNLASQYE  120
SLKKEKQSLL IQLQKLSDVI HKEGGKYCCK QEIDSTGFES DNRDDAKKKN VMDGRPSLSF  180
DLSSQHGANG VISDDDSSIK ADYLVLNDDA DHHLLKMVEA GDSSLTSPEN WGSLDENGLL  240
DQQPNTTSYD QWWDFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-137HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538251.11e-128PREDICTED: homeobox-leucine zipper protein ATHB-12-like
RefseqXP_016538252.11e-128PREDICTED: homeobox-leucine zipper protein ATHB-12-like
SwissprotP468972e-66ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A1U8DTA91e-127A0A1U8DTA9_CAPAN; Homeobox-leucine zipper protein HOX6
TrEMBLA0A1U8DVR61e-127A0A1U8DVR6_CAPAN; homeobox-leucine zipper protein ATHB-12-like
STRINGPGSC0003DMT4000006941e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-52homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]