PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08168.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 268aa    MW: 30685.2 Da    PI: 6.9787
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08168.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.7e-082770344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             +WT+eE + + da +++ ++   +W  +a++++ g+t ++++  +
  Sme2.5_08168.1_g00002.1 27 KWTAEENKMFEDALALFDKEtpdRWYNVASMIP-GKTVNDVIKQY 70
                             8*****************99*************.*******9877 PP
2Myb_DNA-binding43.48.1e-14140184347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT++E+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Sme2.5_08168.1_g00002.1 140 PWTEQEHRQFLLGLKKYGKGDWRNISRNFVTTRTPIQVASHAQKY 184
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-42274IPR009057Homeodomain-like
PROSITE profilePS512937.8712378IPR017884SANT domain
SMARTSM007178.3E-102476IPR001005SANT/Myb domain
SuperFamilySSF466896.96E-122681IPR009057Homeodomain-like
CDDcd001671.70E-62774No hitNo description
PfamPF002497.2E-72770IPR001005SANT/Myb domain
PROSITE profilePS5129419.044133189IPR017930Myb domain
SuperFamilySSF466897.18E-17135188IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17136188IPR006447Myb domain, plants
SMARTSM007172.4E-12137187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-11137184IPR009057Homeodomain-like
PfamPF002496.1E-11140184IPR001005SANT/Myb domain
CDDcd001673.80E-9140185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGFIFPPPEA TNVRNSNWLF EENKETKWTA EENKMFEDAL ALFDKETPDR WYNVASMIPG  60
KTVNDVIKQY IELVEDITDI EAGLIPLPGY TTSTSSNSST LEWINHDQEE GIFNKQFYSS  120
SGKRNTSNRS SEYERKKGVP WTEQEHRQFL LGLKKYGKGD WRNISRNFVT TRTPIQVASH  180
AQKYFIRQLS GGKDKRRSSI HDITTVNLTE MKSPSLENHI SSSSPVNSVP SPYQEADIGF  240
KTYGIKLHEH GMHNVILQGL QFGQNNTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-19281021184RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-103HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016544679.11e-164PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H78e-91DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G3BF071e-163A0A2G3BF07_CAPCH; Transcription factor DIVARICATA
STRINGPGSC0003DMT4000492091e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-99MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]