PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08202.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 112aa    MW: 12729.9 Da    PI: 11.2933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08202.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.45.1e-101559549
                             SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             n+  r vtfskRr+g++K  eE+    + ++a ++fs+t k y+y
  Sme2.5_08202.1_g00002.1 15 NEKSRMVTFSKRRKGLFKINEEVKFEAGSRIASVVFSPTRKPYTY 59
                             77889***************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-6362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.956363IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-13566IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-7525IPR002100Transcription factor, MADS-box
PfamPF003193.5E-151559IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-72540IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-74061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDTRKKKIPI ETTINEKSRM VTFSKRRKGL FKINEEVKFE AGSRIASVVF SPTRKPYTYG  60
EVDFSIQKHF RSMKLLTSGM NSHHFNSKIV LIAGGASGPR LPLTPKRNSL CK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016582225.12e-28PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G3BTU22e-28A0A2G3BTU2_CAPCH; Uncharacterized protein
STRINGXP_009597802.18e-24(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-11AGAMOUS-like 61