PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08530.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 536aa    MW: 59887.2 Da    PI: 8.6575
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08530.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07559136
                             TSSS-HHHHHHHHHHHHHTTTT.................-HHHHHHHHT..TTS- CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.................tWktIartmg..kgRt 36
                             +++WT eE+e l  +v+++G +                  W+ I +  g  + Rt
  Sme2.5_08530.1_g00001.1  5 KQKWTSEEEEALRAGVAKHGADdivlidetrgkvndgleIWRQILEFKGfkLSRT 59
                             79********************999999999999999999999998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-5551IPR009057Homeodomain-like
SMARTSM005265.8E-14342405IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.78E-11342403IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-11344403IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.434344443IPR005818Linker histone H1/H5, domain H15
PfamPF005382.7E-8347403IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGADDIVL IDETRGKVND GLEIWRQILE FKGFKLSRTK  60
IVYLEWKFNV TMDEADIELS RGSFENNLFY LHEVVVKSTY TLSSPNPTCG ISLALQVKKD  120
ILKGMSLCQN LVFLGLGSFF YLEYSRVMPT VNNLVERVQT AFSDGRLPGY INNLVVLELK  180
PWGCRMDAFC QNGYGGSALR NMLYGGRPIF FVHHSGNNGR WLRHILDVAF VANEVVNSKE  240
RKGTAGLKVN PRKCEVRSVR AMDISEEMSH VLNCKDKWRN LNVSANGQGP RDKSRTQKVK  300
ANPDAAAAPL AITQAPVSST LIPQDASADT VMEDSSKCAL DGKTASKYNQ MIYDALSSLK  360
EPNGSDTSTL VNFIEQRHEV PQNFRRLLSS RLRRLVQQDK LEKGPDLPIL YINIKRVSIL  420
NLAPDRNGAH QSTTIENSYR IKKEVLEKAK TATSKQKHVG PRQFPNSAYL GETAEEAAIT  480
AAYKVAEAEN KSFVAAEAAK EAERVSKMEE DSDNSLQVYK DIFDKCSHGE IVLLMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-107HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580279.11e-117PREDICTED: telomere repeat-binding factor 4 isoform X1
TrEMBLA0A0V0I2T01e-121A0A0V0I2T0_SOLCH; Putative telomere repeat-binding factor 4-like
STRINGXP_009757029.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-24MYB_related family protein