PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08533.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 234aa    MW: 27132.4 Da    PI: 8.4564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08533.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEd +l+ +++++G+ +W+  +++ g+ R++k+c++rw +yl
  Sme2.5_08533.1_g00002.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLERCGKSCRLRWMNYL 61
                             799*******************************************97 PP
2Myb_DNA-binding59.29.1e-1967110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++
  Sme2.5_08533.1_g00002.1  67 RGNYTKEEDEIILKLHAQLGNK-WSAIAVHLP-GRSDNEIKNHWHT 110
                              899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.709961IPR017930Myb domain
SuperFamilySSF466896.22E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-241568IPR009057Homeodomain-like
CDDcd001677.26E-91661No hitNo description
PROSITE profilePS5129426.44562116IPR017930Myb domain
SMARTSM007173.4E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2669116IPR009057Homeodomain-like
CDDcd001671.29E-1169110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLERCG KSCRLRWMNY  60
LRPNIKRGNY TKEEDEIILK LHAQLGNKWS AIAVHLPGRS DNEIKNHWHT ALKKRVNNSS  120
EGSKKCNNKN SGSNTKRKSS VENKRASDPN NNMHKNLVLE SSSEELSILD YQQDIFQEEL  180
ALDEITSGSF WTQPFQVDSK IDFLAPSIDD YGLVCPPSPF HEFLSSFDLD DYNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-29141187110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755193e-61HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243822.21e-137transcription factor WER-like
TrEMBLA0A3Q7HBV81e-134A0A3Q7HBV8_SOLLC; Uncharacterized protein
STRINGSolyc07g053240.2.11e-135(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.12e-54myb domain protein 107