PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08533.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 250aa    MW: 29068.3 Da    PI: 6.7164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08533.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEd +l  +++++G  +W+  +++ g+ R++k+c++rw ++l
  Sme2.5_08533.1_g00003.1 14 KGTWTPEEDRKLEAYITKYGYWNWRQLPKYAGLARCGKSCRLRWMNHL 61
                             799*******************************************97 PP
2Myb_DNA-binding51.32.6e-1667110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eE e+++++++qlG++ W+ Ia++++  R+++++k++w++
  Sme2.5_08533.1_g00003.1  67 RGNYTKEEVEIILKLHAQLGNR-WSMIASHLP-ERSDNEIKNHWHT 110
                              899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.059961IPR017930Myb domain
SuperFamilySSF466893.0E-2811108IPR009057Homeodomain-like
SMARTSM007174.7E-101363IPR001005SANT/Myb domain
PfamPF002491.3E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-221568IPR009057Homeodomain-like
CDDcd001676.43E-91661No hitNo description
PROSITE profilePS5129424.73562116IPR017930Myb domain
SMARTSM007178.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1367110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2369115IPR009057Homeodomain-like
CDDcd001671.62E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVRTPSYNEN GRKKGTWTPE EDRKLEAYIT KYGYWNWRQL PKYAGLARCG KSCRLRWMNH  60
LRPNVKRGNY TKEEVEIILK LHAQLGNRWS MIASHLPERS DNEIKNHWHT KLKKRATTKE  120
AATNSNDESS KKCNTNKNSG SNITSSVENK NPSDPENYMH KNLVLENSEW SPKESSSEEF  180
PSIDCQHDVF QEDLALEEIT SGSFWTEPFE VDSKIDIVSP SIDYYGLVCP PSPFIPHQFL  240
SSFDLDDYNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27141187110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754467e-56HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081791.11e-127transcription factor MYB15-like
TrEMBLM1CH271e-125M1CH27_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673181e-126(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-52myb domain protein 15