PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08653.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 603aa    MW: 67561.2 Da    PI: 6.9415
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08653.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27e-1684118135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Sme2.5_08653.1_g00001.1  84 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 118
                              ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-1277122No hitNo description
SMARTSM004015.2E-1078130IPR000679Zinc finger, GATA-type
CDDcd002021.17E-1683131No hitNo description
PROSITE patternPS00344084109IPR000679Zinc finger, GATA-type
PfamPF003201.1E-1384118IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-1284118IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.284117IPR000679Zinc finger, GATA-type
PfamPF139192.0E-9348443IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MILSEVRRMV EEMQALNKKL EETEAAIDDF LKPINMEAEA IIKMQLEGEE NRTKEMMNIL  60
QKQAFLEKHQ GQKEIAQMGK QGPCYHCGVT STPLWRNGPP EKPILCNACG SRWRTKGTLA  120
NYTPLHARPE SDDLEDYRVC RVKNTPLKNR EAKVLKQKQN YDNMVVKTPL EYNQGFHRGL  180
DEDTSNRSSS GSAISNTESS AQFGCAEASD LTGPAQSNKW EAMVPSRKRT CTSRSKQSSV  240
EKLTKDLCTI LHEQQSSYSG SSEEDLLFES DKPMVSVEIG HGSREEESEA SSLSVNNKRH  300
YVNEAYSQLS TPPVNINRGV CLSNLGTERT KKPNSQGMEQ HQIKRDKDHL EKLHILGHHT  360
SPLCHIDLKD VLNYEEFMRH FSSDEQKQLL KYLAPVDSFA PPDSLKSMFE SSHFEENLSS  420
FQKLLAEGVF DSSLSGVKIE DSRTLKRLIL CYLTKSKWVE KYHLLKDTKC ISSTNGYEVT  480
GGPNTIGTGH SVNVKRPLEG HHPKYAGAKE AMKSPKRVVM KSSNEEKELI DINSSSFSPR  540
CLFPLPSNSS AVDSLLVAND QEVLLDVPSN SSFAQAELLL PTSNFAPQAS TSSCSVYPHL  600
VRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-147HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361158.10.0PREDICTED: GATA transcription factor 26-like isoform X2
SwissprotQ8W4H11e-133GAT26_ARATH; GATA transcription factor 26
TrEMBLM1CIX10.0M1CIX1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000683480.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-129GATA transcription factor 26