PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08741.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 200aa    MW: 22729.4 Da    PI: 6.1263
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08741.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.23.2e-5538133297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfedyv plk+yl
  Sme2.5_08741.1_g00002.1  38 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITILGFEDYVPPLKQYL 123
                              89************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                              +kyrelegek
  Sme2.5_08741.1_g00002.1 124 NKYRELEGEK 133
                              *******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5231146IPR009072Histone-fold
SuperFamilySSF471132.64E-4040148IPR009072Histone-fold
PfamPF008083.6E-2843107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.5E-197189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.5E-1990108No hitNo description
PRINTSPR006155.5E-19109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEDERRENYP ESSTLPTSTT SSTMTIIPTN NNNTNSNKEQ DRFLPIANVG RIMKKVIPGN  60
GKISKDAKET VQECVSEFIS FVTGEASDKC QREKRKTING DDIIWAITIL GFEDYVPPLK  120
QYLNKYRELE GEKINVPKQQ QPQQHDQKST FSYNSVYSPT GIIPQTSYVS ADQSFPLPFS  180
PNTIHSQLPK QEHVDSMGHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4438128292Transcription factor HapC (Eurofung)
4g92_B6e-4438128292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-131HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-131HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355096.11e-125PREDICTED: nuclear transcription factor Y subunit B-7
SwissprotQ9SIT91e-67NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLM1BE771e-123M1BE77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000431761e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.13e-64nuclear factor Y, subunit B7
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]