PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08795.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 35aa    MW: 4007.55 Da    PI: 9.1932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08795.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.2e-07533129
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                             +g+W+ +Ed +l++ +  +G g+W++ a+
  Sme2.5_08795.1_g00001.1  5 KGPWSFDEDSKLIHSISTYGQGRWDSLAH 33
                             79***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.85135IPR017930Myb domain
SuperFamilySSF466891.12E-7233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-9333IPR009057Homeodomain-like
PfamPF002495.9E-6533IPR001005SANT/Myb domain
CDDcd001672.46E-5734No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 35 aa     Download sequence    Send to blast
MKMKKGPWSF DEDSKLIHSI STYGQGRWDS LAHVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240646.24e-14transcription factor MYB78-like
RefseqXP_006355853.15e-14PREDICTED: transcription factor MYB108-like
RefseqXP_015078167.14e-14transcription factor MYB78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-08myb domain protein 108