PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_08918.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Dof

Protein Properties

Length: 205aa MW: 22056.8 Da PI: 9.21

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_08918.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.3	4.5e-35	28	86	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+lsqPr+ Ck+CrryWt+GG+lr++ +Ggg+rkn k+s Sme2.5_08918.1_g00002.1 28 HQLPCPRCDSTNTKFCYYNNYNLSQPRHCCKSCRRYWTQGGTLRDISIGGGSRKNAKRS 86 6899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-24	5	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.0E-31	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.624	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MTLEASERRV TKQQTGGVQV PPAQEPYHQL PCPRCDSTNT KFCYYNNYNL SQPRHCCKSC 60 RRYWTQGGTL RDISIGGGSR KNAKRSRIYT STPFSSSTSS LSPHLVPGNS PFVLPLPAAN 120 QLLFGSDVKP INNFTSLLSS HVPGVLALGG IEDMGFGIGR PAAWPFPGAL DSYLRNYNNG 180 VGAGAGMWQL SGGEGGFAGS GDYFN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006367424.1	1e-119	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	M1B057	1e-118	M1B057_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400034111	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	5e-36	Dof family protein