PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08985.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 104aa    MW: 12243.1 Da    PI: 8.9399
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08985.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.88.6e-1933103174
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                              kfY +YA++ GFsvrk++ ++s+++++i+ ++fvCskeg++++++ +   ++++r et+ gCk ++ ++k++++
  Sme2.5_08985.1_g00003.1  33 KFYLDYAHRNGFSVRKNRISRSRKDKSIIGQEFVCSKEGFHSKKSLE---SNKQRDETKEGCKVMICLSKKEEE 103
                              6*****************************************99877...8999**************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1633103IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MNAVVPFIPQ ICDEKLREPY IGMEFQSIDI DFKFYLDYAH RNGFSVRKNR ISRSRKDKSI  60
IGQEFVCSKE GFHSKKSLES NKQRDETKEG CKVMICLSKK EEEK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389093e-99AC238909.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131f15 map 1, complete sequence.
GenBankAC2457263e-99AC245726.3 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone slm-44p6 map 10, complete sequence.
GenBankAC2461563e-99AC246156.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-18l8 map 1, complete sequence.
GenBankAC2462113e-99AC246211.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-41e4 map 1, complete sequence.
GenBankHG9755133e-99HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068484.15e-57protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q7ETW61e-53A0A3Q7ETW6_SOLLC; Uncharacterized protein
TrEMBLD5MNY61e-53D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA
STRINGSolyc02g092170.1.11e-40(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-18FAR1 family protein