PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_08988.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 113aa MW: 12865.6 Da PI: 5.339

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_08988.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.7	9.7e-11	2	46	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie++ r v+fskR+ +++ A+ + aev v++fs++gk Sme2.5_08988.1_g00001.1 2 KLIESEKARAVSFSKRKSTLFEQANKFATQAKAEVGVMLFSPSGK 46 569*****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.1E-7	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-17	1	80	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.255	1	54	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-14	4	50	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MKLIESEKAR AVSFSKRKST LFEQANKFAT QAKAEVGVML FSPSGKPCSY GSTSIETIID 60 KFFKMKLEDR QRDHAEGKSI GFEELEDLRK ELEALKQQFD LNVVLEPEEK ESS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015158947.1	7e-45	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	M1DHK1	2e-43	M1DHK1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400089159	3e-44	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	7e-17	AGAMOUS-like 29