PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09148.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 256aa    MW: 28663.5 Da    PI: 8.3115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09148.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-183277147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Sme2.5_09148.1_g00001.1 32 KGPWSAEEDKILTRLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 77
                             79*****************************9.***********985 PP
2Myb_DNA-binding55.81.1e-1786128347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sme2.5_09148.1_g00001.1  86 PFSPAEDEAILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 128
                              79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.5222782IPR017930Myb domain
SuperFamilySSF466891.08E-3130125IPR009057Homeodomain-like
SMARTSM007171.4E-163180IPR001005SANT/Myb domain
PfamPF002493.2E-183277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-253385IPR009057Homeodomain-like
CDDcd001674.23E-153476No hitNo description
SMARTSM007174.1E-1683131IPR001005SANT/Myb domain
PROSITE profilePS5129421.41384133IPR017930Myb domain
PfamPF002491.2E-1486128IPR001005SANT/Myb domain
CDDcd001671.63E-1286129No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2386132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDFFNRCSTS ASSSESSSSE SSQNPNKSER IKGPWSAEED KILTRLVERY GARNWSLISK  60
YIKGRSGKSC RLRWCNQLSP NVEHRPFSPA EDEAILAAHA KYGNRWATIA RLLPGRTDNA  120
VKNHWNSTLK RRYQQLLQQQ QQQNQNPLGS SDVNFNGSAS GSGSGFGSCM EYLNADESPK  180
VNNNNNHNNN SYAVTNHYSG EFDDPMTTLS LAPPGRGGDE LPERKMESFP AGFWDVMRDV  240
IAREVREYVA STGFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-40311326107B-MYB
1gv2_A4e-40291321104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1220530.0AF122053.1 Solanum tuberosum clone 14 tuber-specific and sucrose-responsive element binding factor (TSF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238184.11e-129transcription factor MYB44-like
TrEMBLA0A3Q7H2B01e-128A0A3Q7H2B0_SOLLC; Uncharacterized protein
STRINGSolyc04g079360.1.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-57myb domain protein 77