PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09172.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 153aa    MW: 17619.6 Da    PI: 10.3506
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09172.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-1439134299
                              EEE-..-HHHHT..T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   2 fkvltpsdvlks..grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f +++++ + ++  + l++  +fa+++  g+  +s  ++l+     sW v +  + ++ +  ++ GW+ Fv +n++k gD++vF++
  Sme2.5_09172.1_g00002.1  39 FIAFMHPQYISRscNYLWIKLRFAKKYiPGN--CS-NIMLRVAGRGSWPVAY--NLGPAQAKISIGWRAFVLDNQIKLGDVCVFEV 119
                              44555555555546789**********7555..54.8***************..99999999***********************9 PP

                              -SSSEE..EEEEE-S CS
                       B3  85 dgrsefelvvkvfrk 99 
                              ++ s+  + v++fr+
  Sme2.5_09172.1_g00002.1 120 IKGSQIFMDVTIFRA 134
                              988666699999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2131135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-2032134IPR015300DNA-binding pseudobarrel domain
CDDcd100174.07E-1437133No hitNo description
SMARTSM010192.7E-639135IPR003340B3 DNA binding domain
PfamPF023627.3E-1239134IPR003340B3 DNA binding domain
PROSITE profilePS5086310.29240135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MQKQQSSMFY DVRRTVMDKE KATAYQRAKA NFKSKNPFFI AFMHPQYISR SCNYLWIKLR  60
FAKKYIPGNC SNIMLRVAGR GSWPVAYNLG PAQAKISIGW RAFVLDNQIK LGDVCVFEVI  120
KGSQIFMDVT IFRAAGNMPM QETDRPDFVI DVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-191313324141B3 domain-containing transcription factor VRN1
4i1k_B3e-191313324141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153671e-71AC215367.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0044L14, complete sequence.
GenBankAC2154041e-71AC215404.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0163K16, complete sequence.
GenBankHG9755141e-71HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065637.22e-81B3 domain-containing protein Os11g0197600-like
TrEMBLK4B6W52e-84K4B6W5_SOLLC; Uncharacterized protein
STRINGSolyc02g065310.1.13e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-22related to vernalization1 1