PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09179.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 534aa    MW: 58577.1 Da    PI: 9.2385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09179.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-056789123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C+k F r  nL+ H r H
  Sme2.5_09179.1_g00003.1 67 FICEICNKGFQRDQNLQLHRRGH 89
                             89*******************88 PP
2zf-C2H212.90.00032144166123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k +  +s+ k H + +
  Sme2.5_09179.1_g00003.1 144 WKCEKCSKKYAVQSDWKAHTKIC 166
                              58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-76689No hitNo description
PROSITE profilePS5015710.8456789IPR007087Zinc finger, C2H2
PfamPF121716.5E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035590109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-7139164No hitNo description
SMARTSM00355130144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MMSDDGLSSL AFIQDPNSNL NSNPSSNNPN PNSNPSAKRK RNLPGKPDPD AEVIALSPKS  60
LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNK NEVIKKKVYI CPEKTCIHHD  120
PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHTKICGTRE YKCDCGTLFS  180
RKDSFITHRA FCDALAEESA RFTSIPSTAN LNFRNEILLN GGFNNTNLQH SAGNPQFGSN  240
LFRPEFMGLG LDPAISHHHQ TQLNNVDGQK PRIPLWLDNN MNPNSGNDFL VASSSSTTSN  300
LPHHELVQIA AHNNNQQWFI NGTGGGDDSG IGSSSSQLPS RVLLKEEEEN KRNLSETISS  360
MYYNNHHSET TTPATHMSAT ALLQKAAQMG STRSNSALFG TGFGLMGSSF SKSNGQGQFA  420
AHDQNFNSLM MNSPTTATNI SNQGNRLLFG DMTSSSLEGN ASGNNSDPFN LMPRNNKGKQ  480
VNLSGNEPIE GGLTRDFLGV GGNESRPFLS KNELAKFGNI SGSAMGLSDY SGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-37140205368Zinc finger protein JACKDAW
5b3h_F7e-37140205368Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365738.10.0PREDICTED: protein indeterminate-domain 9-like
TrEMBLM0ZUY60.0M0ZUY6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000086940.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-105C2H2-like zinc finger protein