PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09306.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 169aa    MW: 18846.1 Da    PI: 7.3043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09306.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-204089255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr++  +g+WvAeIr+p   + r +r++lg+f+t  eAa+a++ a+++l+g
  Sme2.5_09306.1_g00002.1 40 TYRGVRQRT-WGKWVAEIREP---N-RgARIWLGTFDTSLEAARAYDDAARRLYG 89
                             69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.41E-193995No hitNo description
PfamPF008473.2E-144089IPR001471AP2/ERF domain
SMARTSM003809.5E-3540103IPR001471AP2/ERF domain
PROSITE profilePS5103222.1684097IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-214098IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-304097IPR001471AP2/ERF domain
PRINTSPR003679.3E-114152IPR001471AP2/ERF domain
PRINTSPR003679.3E-116379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MADSVPEGKS NCSRVKKCTV GRSRKGCMRG KGGPENALCT YRGVRQRTWG KWVAEIREPN  60
RGARIWLGTF DTSLEAARAY DDAARRLYGS DAKLNLSQEL PSAQTNCIDD GECSVLEEAS  120
IFKDGNGKYM VWETPAPSLL DLGFSGEAQI GIDFEKNHHF YQNDFLFHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1741104670ATERF1
3gcc_A5e-1741104670ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432636.18e-67PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_018621869.18e-67PREDICTED: dehydration-responsive element-binding protein 2G-like
RefseqXP_019239124.11e-66PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1J6KEL12e-66A0A1J6KEL1_NICAT; Dehydration-responsive element-binding protein 2g
STRINGXP_009630729.12e-64(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-37ERF family protein