PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09500.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 439aa    MW: 49560.8 Da    PI: 7.837
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09500.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.11.2e-27100192191
                   DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklq 84 
                              aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f  vhk+FG snv+k +k+l++   +e+ ++s ++eA+ +++dP++G +g ++kl+
  Sme2.5_09500.1_g00001.1 100 ACASCKHQRKKCIEGdCVMWRHFPASKMDEFLGVHKVFGISNVTKKIKSLDDVAqQEESIKSFLWEAKLWQEDPIHGPLGEYKKLE 185
                              7***********8866**********************************665439****************************** PP

                   DUF260  85 qqleqlk 91 
                              qql+ql+
  Sme2.5_09500.1_g00001.1 186 QQLQQLQ 192
                              *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.43799202IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-28100192IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
SDRVRNEIIR KKLEVAPMTD KMREDRLCWF GYMQIRSIEA HVKRCERLDL EDMRRGRDLF  60
YNNILLFCCL GGVSPMPNNN DDNNNNAEDE LHEVGSNRPA CASCKHQRKK CIEGDCVMWR  120
HFPASKMDEF LGVHKVFGIS NVTKKIKSLD DVAQQEESIK SFLWEAKLWQ EDPIHGPLGE  180
YKKLEQQLQQ LQIVQLPNVS TISESTTMYL SPLAVDHNMV IPRKNSANNT NHNRQHYNML  240
NSSAPNYTNL LQGGETQGIT SNGLDLINIG GGNNMFGFGN YPNHYGGHDF IPRLQGIVHN  300
QATHYHNGGH VQLHQQRFPY NNVDLGHGKR RNEQSDPFVS PICSGSRHVR GRGIGPIVAT  360
CSSASPIITP SSSLAGPIVA NATRTMLNPS VNGRHVEDGT NQRPEDVATV LHDFTKYNHN  420
ALADPFQHSH LRNLYLLNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-16951927101LOB family transfactor Ramosa2.1
5ly0_B4e-16951927101LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-86HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755141e-86HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027770477.16e-71uncharacterized protein LOC114076116
TrEMBLA0A3Q7F3I51e-144A0A3Q7F3I5_SOLLC; Uncharacterized protein
STRINGSolyc02g077380.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140941012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.15e-20LOB domain-containing protein 2