PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09565.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ZF-HD
Protein Properties Length: 234aa    MW: 26126 Da    PI: 7.4826
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09565.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.41.7e-334097260
              ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                             ++vrY+eClkNhA+ +Ggha+DGCgEfmp+ geegt++alkCaAC+CHRnFHR+e e e
  Sme2.5_09565.1_g00001.1 40 SNVRYRECLKNHAVGIGGHALDGCGEFMPA-GEEGTMDALKCAACNCHRNFHRKEAEGE 97
                             689**************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-304194IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-234395IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-304393IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.9984493IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-20158232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-31161233IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-24171227IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEFDEEQEEQ EQEIGGAGGE NYQTSGREEG VSTASIVRKS NVRYRECLKN HAVGIGGHAL  60
DGCGEFMPAG EEGTMDALKC AACNCHRNFH RKEAEGEVFH HTPPPHLTHH QHPQFSPFSS  120
YRTTHHPSGY LHVNPPPHQR PLALPSTSRD DEDMSNPSSS GGGGGGVGGS RKRFRTKFTG  180
DQKDKMLAFA ERLGWRMQKQ DEALVQQFCA ETNVKRHVFK VWMHNNKHTL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-261722291875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-179HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004237971.11e-131zinc-finger homeodomain protein 2
SwissprotA2Z2592e-74ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH52e-74ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM1AZE81e-129M1AZE8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000336241e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-68homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]