PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09576.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 200aa    MW: 22825.5 Da    PI: 6.5172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09576.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-173887255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr++  + +Wv+e r+p++   +kr++lg++ tae+Aa+a++ a+++l+g
  Sme2.5_09576.1_g00003.1 38 IYRGVRRRN-NDKWVCEMREPTN---QKRIWLGSYPTAEMAARAHDVAALALKG 87
                             69****887.8*********864...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-123787IPR001471AP2/ERF domain
CDDcd000188.28E-293797No hitNo description
PROSITE profilePS5103221.3643895IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-283897IPR001471AP2/ERF domain
SMARTSM003806.7E-2838101IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-203897IPR016177DNA-binding domain
PRINTSPR003674.2E-73950IPR001471AP2/ERF domain
PRINTSPR003674.2E-76177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDNYSSNVYS DKESYLLASS NPKKRAGRKK FKETRHPIYR GVRRRNNDKW VCEMREPTNQ  60
KRIWLGSYPT AEMAARAHDV AALALKGPLA TLNFADSAWR VEVPVSKDPK VLRQAAARAA  120
EVFAIEPIDV PQLNNNNNVV AHEENSASNI YSNSCGIEEW QANMEEECLF SPNPCLFERN  180
FSWDDHVESN VEVSLWSYSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00001PBMTransfer from 471409Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159272.11e-90PREDICTED: dehydration-responsive element-binding protein 1E-like
RefseqXP_025884427.18e-91dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ61e-56DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLM0ZYP17e-90M0ZYP1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000108761e-90(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63030.22e-45ERF family protein