PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_09665.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family SRS
Protein Properties Length: 122aa    MW: 13444.6 Da    PI: 4.4474
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_09665.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70255.81.8e-17141114154
                   DUF702 114 vfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              +f++vr ss++++e+++aYq++v+i+Gh+fkGiLydqG ++
  Sme2.5_09665.1_g00001.1   1 MFQRVRFSSIEENEDQIAYQAVVNINGHIFKGILYDQGDDN 41 
                              59************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016241.3E-19138IPR006511Lateral Root Primordium type 1, C-terminal
PfamPF051424.8E-15140IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MFQRVRFSSI EENEDQIAYQ AVVNINGHIF KGILYDQGDD NHEYNYMNGD DSSSHDDPML  60
HQHNLNITST ATSVANVAGY SGATSAEAAE GLHFLETSLY SSAPLINTTF VGGTQFFPHP  120
RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754427e-51HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755157e-51HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
GenBankKC3319117e-51KC331911.1 Solanum lycopersicum expression of terpenoids 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316391.12e-47transcription factor EXPRESSION OF TERPENOIDS 2
TrEMBLU5L3635e-46U5L363_SOLLC; Expression of terpenoids 2
STRINGSolyc03g033680.1.12e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1760044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-17Lateral root primordium (LRP) protein-related