PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_09968.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C3H

Protein Properties

Length: 242aa MW: 26564.3 Da PI: 4.2881

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_09968.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.3	4.1e-06	54	74	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C f++ +G+C+ G+rC+F Hgp Sme2.5_09968.1_g00004.1 54 CFFYF-NGYCNKGERCSFLHGP 74 44455.5*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-7	46	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.126	48	75	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-6	49	73	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDDEWIKSFT DCVYFLAFPL TCKKPLESHP ENSSELAPLP NKSAVPVYKT DIPCFFYFNG 60 YCNKGERCSF LHGPDDGTAA GKSTEVAYGV PDDPTAEKKT SSGSETGPPG VKKHPDSSEM 120 GPKAAAQEHI ESNMGLHLMA TDVGEQSASH ETSGSPSEEP TAVRLDSLLP AEGLTQGGYY 180 MSPYQSSDKE MEDNVEREEW LESSPGFDVI VGDRVEGLTH EDERNYCWKF GSLLEAYNMK 240 LP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246777.1	1e-102	PREDICTED: zinc finger CCCH domain-containing protein 32-like
TrEMBL	A0A1J6IAT8	1e-101	A0A1J6IAT8_NICAT; Zinc finger ccch domain-containing protein 32
STRING	PGSC0003DMT400053242	1e-100	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11433	9	11