PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10091.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 234aa    MW: 25596.5 Da    PI: 8.277
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10091.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.51.9e-42471461100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrrkCa++C++apyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++l+qq
  Sme2.5_10091.1_g00001.1  47 PCAACKLLRRKCAEECPFAPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLNQQ 132
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+ael+++++e
  Sme2.5_10091.1_g00001.1 133 VQSLQAELNAIRTE 146
                              *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.76546147IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-4247144IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
DILDEIIGKK LKIENIDATS KLHMQQIMGR RHIILEPSCT KLNTIIPCAA CKLLRRKCAE  60
ECPFAPYFSP HEPQKFAAVH KVFGASNVSK LLMEVPESQR ADAANSLVYE ANVRLRDPVY  120
GCMGAISTLN QQVQSLQAEL NAIRTEILRY KYKEATNNLI ITSTGITGAA MTVAEAPQAP  180
STPTHPPRPL PPQESFGVLA PPCSSPPSTR SVYATPPSGA NFNVIPNNNI PYFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-464715411118LOB family transfactor Ramosa2.1
5ly0_B2e-464715411118LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00283DAPTransfer from AT2G30340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-121HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-121HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240624.11e-142LOB domain-containing protein 15-like
SwissprotQ9AT613e-70LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A3Q7GRX21e-141A0A3Q7GRX2_SOLLC; Uncharacterized protein
STRINGSolyc06g007390.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.16e-73LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]