PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10108.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 243aa    MW: 27736.6 Da    PI: 7.524
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10108.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.7e-17160194135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Sme2.5_10108.1_g00003.1 160 CTHCASEKTPQWRTGPLGSKTLCNACGVRYKSGRL 194
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.8E-802241IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-13154204IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556154190IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-14157218No hitNo description
Gene3DG3DSA:3.30.50.109.7E-14158192IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.21E-13159206No hitNo description
PfamPF003202.4E-15160194IPR000679Zinc finger, GATA-type
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDVYGGSTPE VFRIDDLLDF SNEEMFSSSK TTVDFDLNHH YQPPPTDNSY YDAFPNSDDF  60
TDKLCLPSDD VAELEWLSNL VEDSSNNLPS NSLTQTMYTT TATTTTLHSK SRSKRSRSNT  120
SWSSSSLQHK PRHQDETYVY YNKNKCSSSV KSETITPRKC THCASEKTPQ WRTGPLGSKT  180
LCNACGVRYK SGRLLPEYRP AASPTFVLTQ HSNSHRKVME LRRQKQLFDQ QQQGIYGNHY  240
QVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359592.11e-132PREDICTED: GATA transcription factor 4-like
SwissprotO497417e-69GATA2_ARATH; GATA transcription factor 2
TrEMBLM1AUN51e-131M1AUN5_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000307081e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-56GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]