PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10112.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 387aa    MW: 44358.2 Da    PI: 4.4705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10112.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.24.9e-14857150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             k+i++ ++rq+t+ kR   + KKA+E+ + Cd++v+ + +s+ g+l  +s
  Sme2.5_10112.1_g00001.1  8 KKIDDVTKRQITYFKRCSHLYKKAKEITICCDTNVLFVALSPAGRLTKFS 57
                             689*******************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.231160IPR002100Transcription factor, MADS-box
CDDcd002665.95E-16166No hitNo description
SMARTSM004321.0E-12159IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-11222IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-18390IPR002100Transcription factor, MADS-box
PfamPF003193.0E-13956IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-112237IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-113758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGRRIEIKKI DDVTKRQITY FKRCSHLYKK AKEITICCDT NVLFVALSPA GRLTKFSGPK  60
RIEEMLNYYT SLPVQGRLIH IDDVQNLELQ IKKSTLELQI ANANLRDYEP AQDQVPSLHQ  120
LIWCERNLQL SLQKVMARKM ELEKQEKMNA QFIAQQIAPQ QFDTSNWINP YSSSLQGSIY  180
QGHWMDNEKG LANSSSNYAY TPSFASSSQF GNVSYPPIQN LLPYMPLQSQ QQNMIVDVQQ  240
NQAQTFGQSQ AQFTFVESSG NSIKDFWYNM YNSTRPNSST PLTITDPELN NPSQLELENT  300
PSAWTNTIND NNNNSSNNEI IQNNDQSSVP SDAIAPTASE FNYSMEEDTN MGNNEYIVEK  360
SYDNDAWQLD NDFLNEIFNG EEYRSLD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016446375.11e-132PREDICTED: agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A314LD591e-134A0A314LD59_NICAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-19AGAMOUS-like 66