PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10159.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 722aa    MW: 83649.4 Da    PI: 6.6707
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10159.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.42.8e-2473164190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 
                              ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++
  Sme2.5_10159.1_g00003.1  73 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSN 157
                              69********************8888.******************************************998766789******** PP

                     FAR1  84 eHnHela 90 
                               HnHel 
  Sme2.5_10159.1_g00003.1 158 VHNHELL 164
                              *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2273164IPR004330FAR1 DNA binding domain
PfamPF105511.3E-23297388IPR018289MULE transposase domain
PROSITE profilePS5096610.039596631IPR007527Zinc finger, SWIM-type
PfamPF044345.0E-6605630IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4606633IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MEIMAAKPLN NIWIRRQQCP CGDWKCYIKA DGDDHTANVS QTTKSVTSAS SSRDIIFTPY  60
VGQIFKSDDE AFEYYSNFAR KNGFSIRKAR STESQNLGIY RRDFVCYRSG FNQPRKKANV  120
EHPRDRKSVR CGCDAKLYLT KEIVDGVAQW YVSQFSNVHN HELLEDDQVR LLPAYRKIQE  180
ADQERILLLS KAGFPVNRIV KVLELEKGVQ PGQLPFIEKD VRNFVRTCKK TVQENDALIT  240
EKRENDLLEL LEACKASEQK DEGFVYSFTT DENGRVENIA WSYGHSLQAY SFFGDAVIFD  300
STYRSITYNM LFGVWFGIDN HGNAIFLGCV LLQDETSQSF SWALQSFVRF MRGRQPQTIV  360
TDIDSGLRDA IANEMPNTKH VICIWQVLSK LSSWFSMPLG LQYPDFKSEF DMLCRLENVE  420
DFEHQWNQLI AWFGLGSDKH IAFLLSYQDF EHQWNQLVAR FGLGSDKHIA FLLSYRASWA  480
ISYLRNFFLA RTMTIEYWKL VETFMKSILS PQSSLVLFFE QVGLVSSIGN HKKEKQLYMP  540
AKTCLPLEEH ARSILTPYAF NIMQHEIMLS MQYAITEMAN SSFLVRHYKK MEAECLVIWI  600
HEDEQVHCSC KEFEHSGILC RHSIRVLVSK NYFQIPEKYF PLRWRLESSL SPLDDSVIQS  660
SANEYPQVFL ALSGSLYSES FISKQRLDYV NRELKQLLEH VQKMPTVDEV AVSSAPINVN  720
EL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536330.0AC253633.6 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-4f18 map 7, complete sequence.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357635.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_006357636.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_006357637.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0V0IQ620.0A0A0V0IQ62_SOLCH; Putative FAR1-related sequence 10-like
STRINGXP_009624952.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75321927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]