PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_10285.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GeBP

Protein Properties

Length: 589aa MW: 68773.5 Da PI: 4.9228

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_10285.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	36.5	1.3e-11	33	100	5	71
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkk 71 wsee +i+lL+Gli+f+++ +k + + f+++++k+++++ k+q++e i rLK Kf + + Sme2.5_10285.1_g00002.1 33 HKWSEEEQITLLKGLIEFESQCEKYFQIEPCIFHDYIQKKLNVQsLDKRQITEEIDRLKAKFIVDHWE 100 67*******************88888*********9973689************876544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.3E-8	32	114	IPR007592	Protein of unknown function DUF573
SMART	SM00343	0.0071	165	181	IPR001878	Zinc finger, CCHC-type
Pfam	PF00098	3.5E-4	165	180	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.631	166	180	IPR001878	Zinc finger, CCHC-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence Send to blast
MSSNFSDASK AIEEEQIACE KSDSFTTTKA PHHKWSEEEQ ITLLKGLIEF ESQCEKYFQI 60 EPCIFHDYIQ KKLNVQSLDK RQITEEIDRL KAKFIVDHWE KEKPPFDDLV FQLSREACSE 120 VSGHQKFRAQ SSQSQASVTQ GLRGKPPCHK YGRLHLGKYH EGTNACYRCR QIDHFQNECP 180 MRRRGDGDDK DQSSTAPPAS DNQIVATSNT GGVQTVYMRW TIDRIRKLHQ MLSQVCFEPF 240 HMMFSSMSHR KPLLSLKKTF FYNFFPSKEE EEACKLNNTP WVVTRELTEI RDLYPPPKID 300 LENPWQIKKR ILCEEIIRGT LVIPFFEMFE YILRYWTLDM AKDLVENGYG VFVDLWDVTE 360 ENDPKKYVGG SVCLRKLYND NYSLSCIELF NDRGLGIGHE IGLYWDFRSS CLMFKLFSQI 420 KKKITPDEVF VGKLLIPFFE TFEYILRYWT LDMTKSLENG CRVRVNVWDV TEENAIKKYE 480 VPTQVEDEVH DDHPQDADDE GIPQEDEPEE ENIDGGHTQP PIAGESPVLL RRSSRNVQPS 540 TRYPADQWVT LTDEGEPESF SEAIDDENNE KWIKAMQDEI KSLHENKTF

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence Send to blast

MSSNFSDASK AIEEEQIACE KSDSFTTTKA PHHKWSEEEQ ITLLKGLIEF ESQCEKYFQI  60
EPCIFHDYIQ KKLNVQSLDK RQITEEIDRL KAKFIVDHWE KEKPPFDDLV FQLSREACSE  120
VSGHQKFRAQ SSQSQASVTQ GLRGKPPCHK YGRLHLGKYH EGTNACYRCR QIDHFQNECP  180
MRRRGDGDDK DQSSTAPPAS DNQIVATSNT GGVQTVYMRW TIDRIRKLHQ MLSQVCFEPF  240
HMMFSSMSHR KPLLSLKKTF FYNFFPSKEE EEACKLNNTP WVVTRELTEI RDLYPPPKID  300
LENPWQIKKR ILCEEIIRGT LVIPFFEMFE YILRYWTLDM AKDLVENGYG VFVDLWDVTE  360
ENDPKKYVGG SVCLRKLYND NYSLSCIELF NDRGLGIGHE IGLYWDFRSS CLMFKLFSQI  420
KKKITPDEVF VGKLLIPFFE TFEYILRYWT LDMTKSLENG CRVRVNVWDV TEENAIKKYE  480
VPTQVEDEVH DDHPQDADDE GIPQEDEPEE ENIDGGHTQP PIAGESPVLL RRSSRNVQPS  540
TRYPADQWVT LTDEGEPESF SEAIDDENNE KWIKAMQDEI KSLHENKTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	2e-06	DNA-binding storekeeper protein-related transcriptional regulator