PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_10540.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 189aa MW: 22206.6 Da PI: 6.3072

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_10540.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.3	4e-14	83	141	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL v L +eN+ L+ +l++ ++ +k e+ Sme2.5_10540.1_g00002.1 83 RKQRRMISNRESARRSRMRKQRHLDELWSHVLRLRTENHNLIIKLNQVSESHEKIVREN 141 79**********************************************99998876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.880.10	5.0E-5	48	96	IPR008917	Transcription factor, Skn-1-like, DNA-binding domain
SMART	SM00338	1.3E-13	79	143	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	81	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-11	83	133	No hit	No description
Pfam	PF00170	3.0E-12	83	141	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.08E-17	84	134	No hit	No description
PROSITE pattern	PS00036	0	86	101	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-10	97	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MLSSEASTIH YLAPHAQNPS SPLPFDYTFM HKNLSTFQFN TFLTNNSNNN DNIPNYPIQD 60 FMSTNSTTSD ESEEQQHRII DERKQRRMIS NRESARRSRM RKQRHLDELW SHVLRLRTEN 120 HNLIIKLNQV SESHEKIVRE NMQLKDEASD LRRLLTDIQL IDSPNLDDFS ELYDIPCSLK 180 AESSNQSNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	102	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	8e-98	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016574619.1	7e-86	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-36	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A1U8H2I2	2e-84	A0A1U8H2I2_CAPAN; Basic leucine zipper 43
TrEMBL	A0A2G2ZI61	2e-84	A0A2G2ZI61_CAPAN; basic leucine zipper 43-like
STRING	Solyc04g005170.1.1	2e-78	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA947	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	1e-38	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]