PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10561.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-X1
Protein Properties Length: 419aa    MW: 46168.4 Da    PI: 8.1214
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10561.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.65.4e-08233250320
                 zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                               H+C+++CHeG+CppC++
  Sme2.5_10561.1_g00009.1 233 SHRCNEICHEGDCPPCKA 250
                              5***************95 PP
2zf-NF-X121.26.1e-07284303120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              CG+HkC++ CHeG+C+ Cp+
  Sme2.5_10561.1_g00009.1 284 CGRHKCERGCHEGDCGDCPL 303
                              ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.2E-669139No hitNo description
PROSITE patternPS01359070133IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.74270134IPR001841Zinc finger, RING-type
CDDcd060081.75E-7167215No hitNo description
PfamPF014220.031179196IPR000967Zinc finger, NF-X1-type
SMARTSM004380.072179197IPR000967Zinc finger, NF-X1-type
CDDcd060085.30E-9221269No hitNo description
PfamPF014226.1E-5231249IPR000967Zinc finger, NF-X1-type
SMARTSM004383.3E-4231250IPR000967Zinc finger, NF-X1-type
CDDcd060082.16E-11274317No hitNo description
PfamPF014222.0E-4284302IPR000967Zinc finger, NF-X1-type
SMARTSM004387.2E-4284303IPR000967Zinc finger, NF-X1-type
PfamPF014222.3374385IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MISTSATVAP PLSPPSSDSD SDSHCHHHSD LSSTVFRSYF ELSGDHNNEK HDLIKIQAFL  60
TSSRSGALSC LICLERIRPS DPTWSCSSRC FAVFHLHCIQ SWAVQSSNLA AARAATRAAT  120
PNDSSLLWHC PKCRIEYSKS QIPKTYYCFC GKLPDPPHDP WVLPHSCGEI CGRPLMYNCG  180
HHCLLLCHPG PCPSCPKLVK SKCFCGAAED VKRCGFKNFS CNGVCKNLLD CNSHRCNEIC  240
HEGDCPPCKA KGMFRCQCGK VEMKRECFDR VFRCENPCDK LLGCGRHKCE RGCHEGDCGD  300
CPLQGKRTCP CGKRVYEGIA CDVAVSVCGA TCGKMLSCGF HRCPERKCGT VEDMPVNVAA  360
VTGIAHLVLR KLRCRNHKCP APCHSLSRLY GGRQLGKEMN FGIYGLLMQL PAELNMLSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338845.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK81e-143NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G2WI940.0A0A2G2WI94_CAPBA; NF-X1-type zinc finger protein NFXL2
STRINGSolyc06g051570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-135sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors