PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10605.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 827aa    MW: 93426.7 Da    PI: 8.8236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10605.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-20632681255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Sme2.5_10605.1_g00001.1 632 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDEAALRFKG 681
                              7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.102.0E-25238542IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.47255294IPR001680WD40 repeat
PROSITE profilePS502948.729261546IPR017986WD40-repeat-containing domain
SuperFamilySSF509781.78E-30272548IPR017986WD40-repeat-containing domain
SMARTSM00320190306348IPR001680WD40 repeat
SMARTSM0032030357397IPR001680WD40 repeat
SMARTSM0032011406444IPR001680WD40 repeat
SMARTSM0032024500537IPR001680WD40 repeat
Gene3DG3DSA:3.30.730.103.0E-32631690IPR001471AP2/ERF domain
PROSITE profilePS5103224.974632689IPR001471AP2/ERF domain
PfamPF008471.3E-13632681IPR001471AP2/ERF domain
CDDcd000181.26E-19632690No hitNo description
SMARTSM003802.1E-38632695IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21632690IPR016177DNA-binding domain
PRINTSPR003679.4E-11633644IPR001471AP2/ERF domain
PRINTSPR003679.4E-11655671IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MNKPPKPQND KEEEEKLNGS RREEQDRMEQ EEALIALIEH RTKEVEHLRQ CITYYKSQFN  60
EAENRLEETQ LKLARLRGRE NIAASGSSCG NRESPVTSKR RSTSPIQIIE GSSHSLFASK  120
PHRIQGTNPP LRKSPAPDRG MASPFQKNEY SSCSMPQAKP PLIIPDVKPR VSQPLKMTES  180
GPKNPSASDF QAGGSGFAHV TGMKKLKADT SHRKPENEAS EIQPKGTKRK FEQKEHRELI  240
PLIGTYSSAS MIRCQTSCVI SSQHKRKLRT IISCPTNDQL FASSALDGLV NLWQIHGRGS  300
TANLLSSTDC LSSKHRRWPE DVAWHPEGDS LFSVYSADGG DSQISILNLN KGKEKMRVSF  360
LEEKPHVKGM INNIIFMPWE DIQFVTGGSD HAVIMWSNKD GENSWKPKAL HRSFHSSAVM  420
GVAGLQHKKV VMSAGADKRI IGFDLLAQRA EYKHQIESKC MSVLPNPCDF NLFMVQTGTI  480
ERQLRLFDFR LRQTEVHAFG WKQESSDSQS ALINQAWSPD GLYITSGSVD PVIHIFDIRK  540
QFLPSNFVDI IEKTVIVDPR HGKRPYESEE KEESVFPVYS ARSQYDMSAM VSVLSQVIAN  600
TNSSSHELHP LTLPQTTTNQ IQQQGNQERK RHYRGVRQRP WGKWAAEIRD PKKAARVWLG  660
TFDTAEAAAL AYDEAALRFK GNKAKLNFPE RVQSGNTQYL TTPHHHQQQQ LLDHHQQNYS  720
FSNNNELIPQ MVTQPNLYQQ HFPNVHQYAQ LLHGGSNNNI DHMMNFGVSE PHFYNHHQQS  780
SSGGNFVSSN LQQQQPSYHH NQEEDFLGFP MDFGNSSTST GPPSGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27629695269ATERF1
3gcc_A5e-27629695269ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-171HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346631.10.0PREDICTED: uncharacterized protein LOC102592668 isoform X2
TrEMBLA0A1U8EV040.0A0A1U8EV04_CAPAN; uncharacterized protein LOC107850764 isoform X1
STRINGSolyc12g042200.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.16e-41ERF family protein