PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_10699.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

C2H2

Protein Properties

Length: 257aa MW: 27685.1 Da PI: 8.2888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_10699.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Sme2.5_10699.1_g00002.1 138 YECKTCNRTFPSFQALGGHRASH 160 99**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.45E-5	136	165	No hit	No description
Pfam	PF13912	2.2E-13	137	162	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.658	138	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEVLSQNFPD RSCAFKGKRT KRSRPSSPLN TAGTMIVTST SSSVAGGSDD DDIGDGGGTG 60 GDFDNSTNIQ YSPTTSTNQI STTSTSEEDE DMANCLILLA QSGYGHKVNK KEKIGSRKFA 120 EITTCDNSKN GKAGVYVYEC KTCNRTFPSF QALGGHRASH KKPKTIVEEK KTVTINTDSV 180 TVTATATTTA AAVATAVVNH DSHDLQEQGR LNNITNQTVV NNNNNNKIKL HECSICGSXX 240 WIGVFIRTSV RWTHEKA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015057800.1	2e-73	zinc finger protein ZAT5
TrEMBL	A0A1U8ERT8	6e-70	A0A1U8ERT8_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2YHK2	6e-70	A0A2G2YHK2_CAPAN; zinc finger protein ZAT5
STRING	Solyc11g066400.1.1	1e-70	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	7e-26	C2H2 family protein