PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_10738.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 257aa MW: 30004.2 Da PI: 4.4596

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_10738.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	40	93	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k Sme2.5_10738.1_g00001.1 40 KKRRLLPNQVQFLEKTFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 93 45578899*********************************************9 PP
2	HD-ZIP_I/II	121.8	3.5e-39	39	130	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 ekkrrl +qv++LE++Fe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke e+ Sme2.5_10738.1_g00001.1 39 EKKRRLLPNQVQFLEKTFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKARFDKLKDDYDTLFKESED 124 69********************************************************************************** PP HD-ZIP_I/II 87 Lreelk 92 Lr+e++ Sme2.5_10738.1_g00001.1 125 LRNEVN 130 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-18	30	94	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	35	95	IPR001356	Homeobox domain
SMART	SM00389	1.6E-17	38	99	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-15	40	93	IPR001356	Homeobox domain
CDD	cd00086	8.62E-16	40	95	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.4E-18	47	93	IPR009057	Homeodomain-like
PRINTS	PR00031	8.5E-6	66	75	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	70	93	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.5E-6	75	91	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-13	96	136	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MVNFEDVGRG EVDKERPFLA AVEKELSNDD YDSCYHQPEK KRRLLPNQVQ FLEKTFEVDN 60 KLEPERKVQL ANELGLQPRQ IAIWFQNRRA RYKTKLLEKD YDVLKARFDK LKDDYDTLFK 120 ESEDLRNEVN LLTEKLHRRE EEKKNSEQSE PISPIDAQET QKATPIVVTS SIPKLVCKQE 180 DATSAKSDVI DSDSPHYTDG NHSSNVFEQE PSDFSQDEDD NLSKSFLCFP EIGDQIQANS 240 CNLSFQIEDQ PCWFWQC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	1e-142	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006357259.1	1e-167	PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBL	A0A0V0I666	1e-168	A0A0V0I666_SOLCH; Putative ovule protein
STRING	PGSC0003DMT400045471	1e-166	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	8e-46	homeobox 1