PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_10858.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 25858.4 Da    PI: 7.1025
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_10858.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-26959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ien s rqvtfskRr+g++KKAeELS+LCdae+ vi+fs+t++ly ++s
  Sme2.5_10858.1_g00003.1  9 KKIENISSRQVTFSKRRAGLFKKAEELSILCDAEIGVIVFSNTDRLYKFAS 59
                             68***********************************************86 PP
2K-box58.13.9e-20821581388
                    K-box  13 kaesl.qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                              + e+  + el+ Lk+e+ +L++  R+++G++L+ L++keLqqLe+qL +++ ++++kK+++lle +e++  + +el 
  Sme2.5_10858.1_g00003.1  82 TIENVeEPELNSLKAEVAKLRTATRRMKGKELDGLDFKELQQLEHQLTEGILSVKNKKEQVLLEILEKSNLQIEELG 158
                              444441569*******************************************************9999887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.782161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.78E-38277No hitNo description
SuperFamilySSF554551.57E-29288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.94484175IPR002487Transcription factor, K-box
PfamPF014861.2E-1388157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGRGKIEMKK IENISSRQVT FSKRRAGLFK KAEELSILCD AEIGVIVFSN TDRLYKFASS  60
KSSLEKIVDR YNNSSHSCEH PTIENVEEPE LNSLKAEVAK LRTATRRMKG KELDGLDFKE  120
LQQLEHQLTE GILSVKNKKE QVLLEILEKS NLQIEELGHK SCNHYPENYE AARKISVGNS  180
TVICDDKSVR EETSDTSLSL GLSVATSQKK KHPKIECTSN DSENLMILD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-17189187MEF2C
5f28_B2e-17189187MEF2C
5f28_C2e-17189187MEF2C
5f28_D2e-17189187MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754492e-71HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249753.11e-151MADS-box transcription factor 23-like
TrEMBLA0A3Q7JFA21e-150A0A3Q7JFA2_SOLLC; Uncharacterized protein
STRINGSolyc10g080030.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.14e-48AGAMOUS-like 18